Dear RIKEN SciNetS users,

On 26 February 2015, the Bioinformatics Exploratory Committee that examines technologies for bioinformatics in RIKEN decided to close the RIKEN SciNetS service after two months of database transition period from April 2015. All databases on SciNetS has been carefully determined by the Database working group and the databases needed to be periodically published are confirmed that they were transferred and published on RIKEN’s new database infrastructure called “RIKEN Meta Database”. Thus, the RIKEN SciNetS service will be closed on 1st June 2015. Please use the RIKEN Meta Database(http://metadb.riken.jp) that is developed to promote further contribution in data distribution among researchers so that RIKEN’s research results are widely used.

RIKEN Advanced Center for Computing and Communication
Researchers with projects affiliated with RIKEN may input their project reference as an instance in the Database Registry.

1.) A SciNetS account is needed. If you don't have an account, please make one first here.
 
2.) To input a project to the Database Registry, please go here.

Researcher Database
Bioresources

RIKEN BASE

RIKEN databases

Date last modified 2011-12-31
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RIKEN databases
target species (taxonomy)
SciNetS project URI
Attribution update
  The RIKEN integrated database of mammals
Mus musculus
Homo sapiens
Rattus norvegicus
Pan troglodytes
http://scinets.org/item/ria254i
http://scinets.org/db/mammal 2011-04-19
  The Chloroplast Function Database
Arabidopsis thaliana
- http://rarge.psc.riken.jp/chloroplast 2010-10-21
  LegumeTFDB
Glycine max
Lotus japonicus
Medicago truncatula
- http://legumetfdb.psc.riken.jp/ 2010-10-21
  Striga hermonthica EST Database
Striga hermonthica
- http://striga.psc.riken.jp/strigaDB/ 2010-10-21
Radiosynthesis Database of PET Probe - - http://www.nirs.go.jp/research/division/mic/db2/ 2011-04-12
RIKEN Plant Hormone Research Network
Arabidopsis thaliana
- http://hormones.psc.riken.jp/ 2010-08-10
sORFfinder - - http://evolver.psc.riken.jp/ 2010-07-16
SoybeanTFDB
Glycine max
- http://soybeantfdb.psc.riken.jp/ 2011-03-29
GETDB (Gal4 Enhancer Trap Insertion Database)
Drosophila melanogaster
- http://kyotofly.kit.jp/stocks/GETDB/getdb.html 2010-02-17
Resource of Asian Primary Immunodeficiency Diseases (RAPID)
Homo sapiens
http://scinets.org/item/ria271i
http://rapid.rcai.riken.jp/RAPID/index_html 2011-03-29
THz database 2.0 - - http://www.riken.jp/THzdatabase/ 2010-02-10
Cerebellar Development Transcriptome Database
Mus musculus
http://scinets.org/item/ria237i
http://www.cdtdb.neuroinf.jp 2013-07-12
  Positional MEDILNE (PosMed) - Rice
Oryza sativa
- http://omicspace.riken.jp/PosMed/search?objectSet=gene&species=Os 2010-12-28
  FANTOM4
Homo sapiens
Mus musculus
http://scinets.org/item/ria187i
http://fantom.gsc.riken.jp/4/ 2011-04-22
Cassava Full-Length cDNA Database
Manihot esculenta
http://scinets.org/item/ria2i
http://amber.gsc.riken.jp/cassava/index.php?contents=top 2011-03-29
RPOPDB
Populus nigra
- http://rpop.psc.riken.jp/ 2011-03-30
Rice FOX
Oryza sativa
- http://ricefox.psc.riken.jp/ 2011-01-04
RIKEN Activation Tagging Line Database
Arabidopsis thaliana
http://scinets.org/item/ria37i
http://amber.gsc.riken.jp/act/top.php# 2011-03-30
RIKEN Arabidopsis Genome Encyclopedia (RARGE)
Arabidopsis thaliana
http://scinets.org/item/ria16i
http://rarge.gsc.riken.jp/ 2011-04-22
Arabidopsis Tiling Array stress response database
Arabidopsis thaliana
http://scinets.org/item/ria24i
http://omicspace.riken.jp/gps/group/psca1 2011-03-30
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